PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00344g01114.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 368aa    MW: 40266.7 Da    PI: 8.8642
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00344g01114.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-111136227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                              +++ C+++ rtG C++G++C+F+H+p
  Peaxi162Scf00344g01114.1 11 GEPDCSYYIRTGLCRFGSTCRFNHPP 36
                              6899********************97 PP

2zf-CCCH39.59.2e-135781327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              +++C+++++tGtCk+G++CkF+H++
  Peaxi162Scf00344g01114.1 57 QPECQYYLKTGTCKFGATCKFHHPK 81
                              799********************96 PP

3zf-CCCH382.7e-1292115427
                               ---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                +C +++rtG+Ck+G++CkF+H++
  Peaxi162Scf00344g01114.1  92 TECAYYMRTGQCKFGSTCKFHHPQ 115
                               58********************97 PP

4zf-CCCH38.22.4e-12228254127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               +++++C+f+++tG Ck+G+ C+F+H++
  Peaxi162Scf00344g01114.1 228 PGQPECQFYMKTGDCKFGAVCRFHHPR 254
                               5789*********************96 PP

5zf-CCCH40.44.7e-13274300127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++lC f++r+G+Ck+G++CkF H++
  Peaxi162Scf00344g01114.1 274 PGEPLCIFYSRYGICKFGPSCKFDHPM 300
                               589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2E-5936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483937IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-81136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-51437IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-41535IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-65481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.145482IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-105781IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-65883IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-56080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.75688116IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-588115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-692116IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-1092115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-594114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596227255IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6227254IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-9229254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6231257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5233257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037273301IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7273300IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10275300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5276300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4278298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MESGHYPVRE GEPDCSYYIR TGLCRFGSTC RFNHPPNRKL AIATARMKGE YPERIGQPEC  60
QYYLKTGTCK FGATCKFHHP KDKAGIAGRN ETECAYYMRT GQCKFGSTCK FHHPQPSNMM  120
VSLRGSPVYP PVPSATTPGQ LSYPLSRGSF IPGARWQGPS SYTPLIVPQG VVSVPGFAYS  180
GQLGSVSSPE GQQQTSGNGQ VYGTARSSDT ATMGYYALQR ENVFPERPGQ PECQFYMKTG  240
DCKFGAVCRF HHPRERLIPP PDCLLSPIGL PLRPGEPLCI FYSRYGICKF GPSCKFDHPM  300
TVFTYSVSAS SSAEAPTVQR LLGSSSGTSA LTLTSEGLVE AVSTKPRRLS LSETRKMPPG  360
DNNIDREG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141601e-178BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611380.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4
RefseqXP_016481312.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLK4D5F00.0K4D5F0_SOLLC; Uncharacterized protein
STRINGSolyc11g008900.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-159zinc finger protein 1